About
About the code
PermutationTests.jl includes seven code units (.jl files):
| Unit | Description |
|---|---|
| PermutationTests.jl | Main module, declaration of constants, types and structuress |
| stats.jl | Low-level computations for statistics and test-statistic |
| tools.jl | General tools |
| uniTests.jl | Univariate tests |
| uniTests_API.jl | API for univariate tests |
| multcompTests.jl | Multiple comparisons tests |
| multcompTests_API.jl | API for multiple comparisons tests |
In addition, units for running benchmarks, error control tests and power analysis can be found in the src\extras folder.
A unit to test the main functions is available as well in the test folder.
About the authors
Marco Congedo, corresponding author and developer of the package, is a Research Director of CNRS (Centre National de la Recherche Scientifique), working at UGA (University of Grenoble Alpes, France). Contact: first name dot last name at gmail dot com
Livio Finos, is Full professor at the Department of Statistical Sciences of Univerità di Padova, Italy. Contact: first name dot last name at unipd dot it
Disclaimer
This version has been roughly tested. Independent reviewers for both the code and the documentation are welcome.
TroubleShoothing
| Problem | Solution |
|---|---|
| Folds.jl does not work properly for future versions of julia | use keyword argument threaded=false for multiple comparison tests |
Other relevant packages
References
R.A. Fisher (1935) The Design of Experiments, Hafner.
E.S. Edgington (1995), Randomization Tests, Marcel Dekker Inc.
A.P. Holmes, R.C. Blair, J.D.G Watson, I. Ford (1996) Non-Parametric Analysis of Statistic Images From Functional Mapping Experiments. Journal of Cerebral Blood Flow and Metabolism 16:7-22.
F. Pesarin (2001) Multivariate Permutation Tests with applications in Biostatistics. John Wiley & Sons.
E. J. G. Pitman (1937) Significance tests which may be applied to samples from any population, Royal Statistical Society Supplement, 4: 119-130 and 225-32 (parts I and II).
E. J. G. Pitman (1938) Significance tests which may be applied to samples from any population. Part III. The analysis of variance test. Biometrika. 29 (3–4): 322–335.
P.H. Westfall, S.S. Young (1993) Resampling-Based Multiple Testing: Examples and Methods for P-Value Adjustment, John Wiley & Sons.
A.M. Winkler, M.A. Webster, J.C. Brooks, et al. (2016) Non-parametric combination and related permutation tests for neuroimaging. Human Brain Mapping, 37(4):1486-511.
Contents
- PermutationTests.jl
- About
- Main module
- Univariate tests
- Multiple comparisons tests
- Package tests
- Tools
- Statistics
- Test statistics
- Create your own test
- Chose a test
Index
PermutationTests._permMcTest!PermutationTests._permTest!PermutationTests.allPermsPermutationTests.anovaMcTestISPermutationTests.anovaMcTestRMPermutationTests.anovaTestISPermutationTests.anovaTestRMPermutationTests.assignmentPermutationTests.chiSquaredMcTestPermutationTests.chiSquaredTestPermutationTests.cochranqMcTestPermutationTests.cochranqTestPermutationTests.correlationMcTestPermutationTests.correlationMcTest!PermutationTests.correlationTestPermutationTests.correlationTest!PermutationTests.dispersionPermutationTests.eqStatPermutationTests.fisherExactMcTestPermutationTests.fisherExactTestPermutationTests.flipPermutationTests.genPermsPermutationTests.mcNemarMcTestPermutationTests.mcNemarTestPermutationTests.membershipPermutationTests.nrPermsPermutationTests.pointBiSerialMcTestPermutationTests.pointBiSerialTestPermutationTests.signMcTestPermutationTests.signTestPermutationTests.statisticPermutationTests.studentMcTest1SPermutationTests.studentMcTest1S!PermutationTests.studentMcTestISPermutationTests.studentMcTestRMPermutationTests.studentMcTestRM!PermutationTests.studentTest1SPermutationTests.studentTest1S!PermutationTests.studentTestISPermutationTests.studentTestRMPermutationTests.studentTestRM!PermutationTests.table2vecPermutationTests.testStatisticPermutationTests.trendMcTestPermutationTests.trendMcTest!PermutationTests.trendTestPermutationTests.trendTest!PermutationTests.ΠPermutationTests.μPermutationTests.μ0PermutationTests.μ0σ1PermutationTests.σPermutationTests.σ1PermutationTests.σ²PermutationTests.∑PermutationTests.∑of²PermutationTests.∑ofΠPermutationTests.∑∑of²